The goal of rockup is to make it easy to connect to R Studio Server via rocker.
Installation instructions
Install the development version of rockup from GitHub with:
BiocManager::install("rytenlab/rockup")Basic usage
rockup has a single user-level function docker_run_rserver, which is designed to start a container running R Studio Server on a rocker. Below is an example of how to run docker_run_rserver with minimal config, for a more detailed guide see the vignette.
docker_run_rserver(
image = "bioconductor/bioconductor_docker:RELEASE_3_13",
port = 8888,
name = "your_container_name"
)Code of Conduct
Please note that the rockup project is released with a Contributor Code of Conduct. By contributing to this project, you agree to abide by its terms.
Development tools
- Continuous code testing is possible thanks to GitHub actions through usethis, remotes, and rcmdcheck customized to use Bioconductor’s docker containers and BiocCheck.
- Code coverage assessment is possible thanks to codecov and covr.
- The documentation website is automatically updated thanks to pkgdown.
- The code is styled automatically thanks to styler.
- The documentation is formatted thanks to devtools and roxygen2.
For more details, check the dev directory.
This package was developed using biocthis.
